Function reference
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colog() - Compute Logarithmic Transformation for Probabilities
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example_panalyzer - PAnalyzer Example Data
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global_fdr() - Compute Global False Discovery Rate (FDR)
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iwf_grouping() - Perform Protein Grouping Based on Peptide-to-Protein Relations
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iwf_load_psms() - Load PSMs from mzIdentML Files
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iwf_pep2group() - Assign Peptides to Protein Groups
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iwf_pep2level() - Map Peptides to a Specified Reference Level
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iwf_psm2pep() - Aggregate PSMs into Peptides
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lpg() - LP Gamma (LPG) Metrics Calculation
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panalyzer() - Run PAnalyzer on Peptide-to-Protein Data
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plot_groups() - Plot Protein Groups Composition
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plot_rank() - Plot Rank of Decoy Scores
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refined_fdr() - Refined False Discovery Rate (FDR) Calculation
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summary(<panalyzer>) - Summarize PAnalyzer Results
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target_decoy_approach() - Target-Decoy Approach for FDR Estimation